Publications – Ecology and Evolution Lab

Ecology and Evolution Lab

The lab of Sur Herrera Paredes

Research articles

Chappell CR, Goddard PC, Golden LA, Hernandez J, Ortiz Chavez D, Hossine M, Herrera Paredes S, VanValkenburg E, Nell LA, Fukami T & Dhami MK. “Transcriptional Responses to Priority Effects in Nectar Yeast” (2024). Molecular Ecology e17553. doi: 10.1111/mec.17553.

Iweka, Chinyere Agbaegbu, Erica Seigneur, Amira Latif Hernandez, Sur Herrera Paredes, Mica Cabrera, Eran Blacher, Connie Tsai Pasternak, Frank M. Longo, Luis de Lecea, and Katrin I. Andreasson. “Myeloid Deficiency of the Intrinsic Clock Protein BMAL1 Accelerates Cognitive Aging by Disrupting Microglial Synaptic Pruning.” Journal of Neuroinflammation 20, no. 1 (December 2023): 1–16. https://doi.org/10.1186/s12974-023-02727-8.

Chappell, Callie Rodgers, Manpreet K Dhami, Mark C Bitter, Lucas Czech, Sur Herrera Paredes, Fatoumata Binta Barrie, Yadira Calderón, et al. “Wide-Ranging Consequences of Priority Effects Governed by an Overarching Factor.” Edited by Maureen L Coleman. eLife 11 (October 27, 2022): e79647. https://doi.org/10.7554/eLife.79647.

Nivina, Aleksandra, Sur Herrera Paredes, Hunter B Fraser, and Chaitan Khosla. “GRINS: Genetic Elements That Recode Assembly-Line Polyketide Synthases and Accelerate Their Diversification.” Proceedings of the National Academy of Sciences 118, no. 26 (June 29, 2021): e2100751118. https://doi.org/10.1073/pnas.2100751118.

Herrera Paredes, Sur, Tianxiang Gao, Theresa F. Law, Omri M. Finkel, Tatiana Mucyn, Paulo José Pereira Lima Teixeira, Isaí Salas González, et al. “Design of Synthetic Bacterial Communities for Predictable Plant Phenotypes.” Edited by Eric Kemen. PLoS Biology 16, no. 2 (February 20, 2018): e2003962. https://doi.org/10.1371/journal.pbio.2003962.

Levy, Asaf, Isai Salas Gonzalez, Maximilian Mittelviefhaus, Scott Clingenpeel, Sur Herrera Paredes, Jiamin Miao, Kunru Wang, et al. “Genomic Features of Bacterial Adaptation to Plants.” Nature Genetics 50, no. 1 (January 18, 2018): 138–50. https://doi.org/10.1038/s41588-017-0012-9.

Finkel, Omri M, Gabriel Castrillo, Sur Herrera Paredes, Isai Salas Gonz?lez, and Jeffery L Dangl. “Understanding and Exploiting Plant Beneficial Microbes.” Current Opinion in Plant Biology 38 (August 13, 2017): 155–63. https://doi.org/10.1016/j.pbi.2017.04.018.

Castrillo, Gabriel, Paulo José Pereira Lima Teixeira, Sur Herrera Paredes, Theresa F. Law, Laura De Lorenzo, Meghan E. Feltcher, Omri M. Finkel, et al. “Root Microbiota Drive Direct Integration of Phosphate Stress and Immunity.” Nature 543, no. 7646 (March 15, 2017): 513–18. https://doi.org/10.1038/nature21417.

Herrera Paredes, Sur, and Sarah L. Lebeis. “Giving Back to the Community: Microbial Mechanisms of Plant-Soil Interactions.” Edited by Joseph K. Bailey. Functional Ecology 30, no. 7 (July 2016): 1043–52. https://doi.org/10.1111/1365-2435.12684.

Lebeis, Sarah L., Sur Herrera Paredes, Derek S. Lundberg, Natalie Breakfield, Jase Gehring, Meredith McDonald, Stephanie Malfatti, et al. “Salicylic Acid Modulates Colonization of the Root Microbiome by Specific Bacterial Taxa.” Science 349, no. 6250 (August 21, 2015): 860–64. https://doi.org/10.1126/science.aaa8764.

Morgan, Andrew P., James J. Crowley, Randal J. Nonneman, Corey R. Quackenbush, Cheryl N. Miller, Allison K. Ryan, Molly a. Bogue, et al. “The Antipsychotic Olanzapine Interacts with the Gut Microbiome to Cause Weight Gain in Mouse.” Edited by Markus M. Heimesaat. PLoS ONE 9, no. 12 (December 15, 2014): e115225. https://doi.org/10.1371/journal.pone.0115225.

Herrera Paredes, Sur, Michael F Melgar, and Praveen Sethupathy. “Promoter-Proximal CCCTC-Factor Binding Is Associated with an Increase in the Transcriptional Pausing Index.” Bioinformatics 29, no. 12 (June 15, 2013): 1485–87. https://doi.org/10.1093/bioinformatics/bts596.

Lundberg, Derek S., Sarah L. Lebeis, Sur Herrera Paredes, Scott Yourstone, Jase Gehring, Stephanie Malfatti, Julien Tremblay, et al. “Defining the Core Arabidopsis Thaliana Root Microbiome.” Nature 488, no. 7409 (August 1, 2012): 86–90. https://doi.org/10.1038/nature11237.

Rodríguez Plaza, Jonathan G, Amanda Villalón Rojas, Sur Herrera, Georgina Garza-Ramos, Alfredo Torres Larios, Carlos Amero, Gabriela Zarraga Granados, et al. “Moonlighting Peptides with Emerging Function.” PLoS ONE 7, no. 7 (January 2012): e40125. https://doi.org/10.1371/journal.pone.0040125.